PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.090320.1
Common NameCsa_2G035330, LOC101216738
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 707aa    MW: 75766.5 Da    PI: 6.5447
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.090320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.2e-16476522455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Cucsa.090320.1 476 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 522
                     6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.43E-17468526No hitNo description
Gene3DG3DSA:4.10.280.103.3E-20469530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-20469533IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349472521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-13476522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17478527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MPLSELYRVA RGKLDSTQDK NSMVASDLSM NPENDVFELV WENGQILLQG QSNRPRKNSN  60
LNTSQAQCLP SHSPRDRDRD VGYFNNAKMG KFGAIDSVVR DVMSTAPSPD VELAHDDDDD  120
MVPWLSYPLD GHLQHDYSSD FLPELSGVTV NDFPSRNSIA SSIGKASGGN QVNRERDMHL  180
NSMHGANLED GNISKLSSLD VSAARARSST NQLHSSASQQ SQTSFPHLRT KCAGETENTT  240
GKMLHDSLVG HSPQVPLIAS SSSSIAKQKL DPTPPNNSSN IINFSHFLRP ASLLKSNPQK  300
HGVPGTGGSR NLDSMVNNSS AANSQPHESS LIAIQGGIRN ESNSGCKNAV VPTIDGKSPS  360
DAKPLEQSQT NKQPEAACLG DSADHDDRLK HRFEVGATKG LADSEKAVES VFAASLCSRN  420
SVEGASDDPP HNRKRKCHDT EDSEWHSDDV EEDCNDVKRV TSARGAGSKR SRAAEVHNLS  480
ERRRRDRINE KMRALQELIP NCNKVDKASM LDEAIEYLKT LQLQVQIMSM GAGLFMPPMM  540
FPGAMAPMNT PHIYPPMGIG MGYGIGMPDM NGGIPMVQVP HMQGMHFPGP SMPAQTVMHG  600
LPSSNFQVLG LPGQGLPMPM PRGPVAPFSG GPFVTNSSMA VAPVDNFGST AACSSKDASP  660
NINSPMGPNG GTDPSITPAL RQANEQASCV NASSVKPTSK KDLIAN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1480485ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648884.10.0PREDICTED: transcription factor PIF3 isoform X1
RefseqXP_011648885.10.0PREDICTED: transcription factor PIF3 isoform X1
TrEMBLA0A0A0LH160.0A0A0A0LH16_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-36phytochrome interacting factor 3
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]